I am using random Forest in R and only want to Plot the OOB Error.
When I do plot(myModel, log = "y") I get a diagram where each of my class is a line. On the x-axis are the ntree while on the x-Axis there is the Error rate.
When I try plot(myModel$err.rate, log = "y") I get this:
Why is there no line like the ones above?
Contents
hide
Best Answer
The err.rate is stored in a matrix where the first column is the OOB Error. Each class gets its own column.
To access the err.rate do this myModel $err.rate[,1], for plotting simply plot(myModel $err.rate[,1]).